PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G243500.1.p
Common NameGLYMA_19G243500, LOC100801868
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 601aa    MW: 68148.6 Da    PI: 6.8689
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G243500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.91.5e-14105165267
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 
                          Wt++evlaL ++r++me++l +       W++vs++++e gf++s+++Ckek+e+ ++++ +i++ 
  Glyma.19G243500.1.p 105 WTNDEVLALFRIRSSMENWLPEL-----TWDHVSRRLAEVGFKKSAEKCKEKFEDESRYFDNINNY 165
                          *******************9987.....9*******************************999875 PP

2trihelix91.77.7e-29459544185
             trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          rW+++evlaLi++r    ++ ++ +  k+plWe++s+ m++ g++rs+k+Ckekwen+nk+++k+k++ +k++s +s+tcpyf+ql
  Glyma.19G243500.1.p 459 RWPRDEVLALINLRCTSLSSNEEkEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYFRKTKDNVNKKRSLNSRTCPYFHQL 544
                          8*************988877776256899********************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.08697156IPR017877Myb-like domain
PfamPF138371.5E-9103168No hitNo description
CDDcd122031.71E-25458524No hitNo description
PfamPF138374.0E-19458544No hitNo description
PROSITE profilePS500906.388459517IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MFDGAPDQFH QFIAPRTTLP LHLSFPLHHH ASSTPPPNTF LPFDPYNPSS HHLLPSLQTN  60
HLLHPPTTSP THKHEQDKVI APIVNNNEEI QRDQRQLPDQ LTDSWTNDEV LALFRIRSSM  120
ENWLPELTWD HVSRRLAEVG FKKSAEKCKE KFEDESRYFD NINNYGKNNF RFLISELEEL  180
CQNSDPGAHD HNGVVVRSEK THHLGGHALE ENSRDIETTT ATKRCDIGSD TVVEKSNSKV  240
RKRKRRDRFE MFKGFCESVV NKMMAQQEET HNKLLEDMVK RDQEKFAREE AWKKQELDRM  300
KKELEIMAQE QAIAGDRQAT IIEFLKKCAT TTITSLSPPS QNAKYYITND SNLPNCASHS  360
QNPNNPSNED NNLEPTPSSK MIQNHGQTTL GAENPSTSDT LLQVPSSSNS SPTTHNPSSS  420
LNSHNNIIPL ESNSVSTYKP TSTTPMASSE NSKDDIGRRW PRDEVLALIN LRCTSLSSNE  480
EKEGNKGPLW ERISQGMSAL GYKRSAKRCK EKWENINKYF RKTKDNVNKK RSLNSRTCPY  540
FHQLSCLYGQ GKIVPQSERE GNYCLNPTPN SGQVPPDDDH QVQDDESSQV GSAGLVQYAC  600
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245RKRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.88610.0cotyledon| root| seed coat
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150384e-96AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604841.10.0PREDICTED: trihelix transcription factor GTL2-like
RefseqXP_006604842.10.0PREDICTED: trihelix transcription factor GTL2-like
TrEMBLA0A0B2SG000.0A0A0B2SG00_GLYSO; Trihelix transcription factor GTL2
TrEMBLI1NC800.0I1NC80_SOYBN; Uncharacterized protein
STRINGGLYMA19G43280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Representative plantOGRP1061159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.13e-68Trihelix family protein